reverse transcriptase quantitative polymerase chain reaction Search Results


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(A) Design of the Round Robin Test. * ER1: Department of Pathology, FAU Erlangen, ER2: Department of Urology, FAU Erlangen, R: Department of Urology, University of Regensburg, M: Department of Pathology, TU Munich, U: Department of Urology, University of Ulm, MAN: Department of Urology Mannheim, RKU Heidelberg, C: Institute of Molecular Pathology, Cologne. (B) Simplified work flow in the participating laboratory Sites. RC-RNA = Reference-Control-RNA (=centrally extracted RNA/CRNA); Set 1 & 2 = sections for peripheral RNA extraction on day 1 and 2. Specified work flow in the peripheral lab sites is depicted on the right: The protocol was conceived for three days. On day 1 the CRNA was measured whereas on day 2 and day 3 RNA was extracted in the lab sites and then measured. (RC-RNA = reference control-RNA; RT-qPC R = reverse <t>transcriptase</t> <t>quantitative</t> <t>polymerase</t> <t>chain</t> <t>reaction).</t> (C) Selection criteria (according to REMARK) of the consecutive MIBC validation cohort ( n = 88). RNA extraction and tissue microarray (TMA) preparation were performed using the same FFPE block with tumor content of at least 30%. PD-L1 staining was carried out on Ventana Benchmark Ultra autostainer.
Reverse Transcriptase Quantitative Polymerase Chain Reaction Kit (Rt Qpcr, supplied by STRATIFYER Molecular Pathology GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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(A) Design of the Round Robin Test. * ER1: Department of Pathology, FAU Erlangen, ER2: Department of Urology, FAU Erlangen, R: Department of Urology, University of Regensburg, M: Department of Pathology, TU Munich, U: Department of Urology, University of Ulm, MAN: Department of Urology Mannheim, RKU Heidelberg, C: Institute of Molecular Pathology, Cologne. (B) Simplified work flow in the participating laboratory Sites. RC-RNA = Reference-Control-RNA (=centrally extracted RNA/CRNA); Set 1 & 2 = sections for peripheral RNA extraction on day 1 and 2. Specified work flow in the peripheral lab sites is depicted on the right: The protocol was conceived for three days. On day 1 the CRNA was measured whereas on day 2 and day 3 RNA was extracted in the lab sites and then measured. (RC-RNA = reference control-RNA; RT-qPC R = reverse <t>transcriptase</t> <t>quantitative</t> <t>polymerase</t> <t>chain</t> <t>reaction).</t> (C) Selection criteria (according to REMARK) of the consecutive MIBC validation cohort ( n = 88). RNA extraction and tissue microarray (TMA) preparation were performed using the same FFPE block with tumor content of at least 30%. PD-L1 staining was carried out on Ventana Benchmark Ultra autostainer.
Transscripttm First Step Quantitative Reverse Transcriptase Polymerase Chain Reaction (Qrt Pcr) Supermix, supplied by Promega, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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(A) Design of the Round Robin Test. * ER1: Department of Pathology, FAU Erlangen, ER2: Department of Urology, FAU Erlangen, R: Department of Urology, University of Regensburg, M: Department of Pathology, TU Munich, U: Department of Urology, University of Ulm, MAN: Department of Urology Mannheim, RKU Heidelberg, C: Institute of Molecular Pathology, Cologne. (B) Simplified work flow in the participating laboratory Sites. RC-RNA = Reference-Control-RNA (=centrally extracted RNA/CRNA); Set 1 & 2 = sections for peripheral RNA extraction on day 1 and 2. Specified work flow in the peripheral lab sites is depicted on the right: The protocol was conceived for three days. On day 1 the CRNA was measured whereas on day 2 and day 3 RNA was extracted in the lab sites and then measured. (RC-RNA = reference control-RNA; RT-qPC R = reverse <t>transcriptase</t> <t>quantitative</t> <t>polymerase</t> <t>chain</t> <t>reaction).</t> (C) Selection criteria (according to REMARK) of the consecutive MIBC validation cohort ( n = 88). RNA extraction and tissue microarray (TMA) preparation were performed using the same FFPE block with tumor content of at least 30%. PD-L1 staining was carried out on Ventana Benchmark Ultra autostainer.
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(A) Design of the Round Robin Test. * ER1: Department of Pathology, FAU Erlangen, ER2: Department of Urology, FAU Erlangen, R: Department of Urology, University of Regensburg, M: Department of Pathology, TU Munich, U: Department of Urology, University of Ulm, MAN: Department of Urology Mannheim, RKU Heidelberg, C: Institute of Molecular Pathology, Cologne. (B) Simplified work flow in the participating laboratory Sites. RC-RNA = Reference-Control-RNA (=centrally extracted RNA/CRNA); Set 1 & 2 = sections for peripheral RNA extraction on day 1 and 2. Specified work flow in the peripheral lab sites is depicted on the right: The protocol was conceived for three days. On day 1 the CRNA was measured whereas on day 2 and day 3 RNA was extracted in the lab sites and then measured. (RC-RNA = reference control-RNA; RT-qPC R = reverse <t>transcriptase</t> <t>quantitative</t> <t>polymerase</t> <t>chain</t> <t>reaction).</t> (C) Selection criteria (according to REMARK) of the consecutive MIBC validation cohort ( n = 88). RNA extraction and tissue microarray (TMA) preparation were performed using the same FFPE block with tumor content of at least 30%. PD-L1 staining was carried out on Ventana Benchmark Ultra autostainer.
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(A) Design of the Round Robin Test. * ER1: Department of Pathology, FAU Erlangen, ER2: Department of Urology, FAU Erlangen, R: Department of Urology, University of Regensburg, M: Department of Pathology, TU Munich, U: Department of Urology, University of Ulm, MAN: Department of Urology Mannheim, RKU Heidelberg, C: Institute of Molecular Pathology, Cologne. (B) Simplified work flow in the participating laboratory Sites. RC-RNA = Reference-Control-RNA (=centrally extracted RNA/CRNA); Set 1 & 2 = sections for peripheral RNA extraction on day 1 and 2. Specified work flow in the peripheral lab sites is depicted on the right: The protocol was conceived for three days. On day 1 the CRNA was measured whereas on day 2 and day 3 RNA was extracted in the lab sites and then measured. (RC-RNA = reference control-RNA; RT-qPC R = reverse transcriptase quantitative polymerase chain reaction). (C) Selection criteria (according to REMARK) of the consecutive MIBC validation cohort ( n = 88). RNA extraction and tissue microarray (TMA) preparation were performed using the same FFPE block with tumor content of at least 30%. PD-L1 staining was carried out on Ventana Benchmark Ultra autostainer.

Journal: Oncotarget

Article Title: A multicenter round robin test of PD-L1 expression assessment in urothelial bladder cancer by immunohistochemistry and RT-qPCR with emphasis on prognosis prediction after radical cystectomy

doi: 10.18632/oncotarget.24531

Figure Lengend Snippet: (A) Design of the Round Robin Test. * ER1: Department of Pathology, FAU Erlangen, ER2: Department of Urology, FAU Erlangen, R: Department of Urology, University of Regensburg, M: Department of Pathology, TU Munich, U: Department of Urology, University of Ulm, MAN: Department of Urology Mannheim, RKU Heidelberg, C: Institute of Molecular Pathology, Cologne. (B) Simplified work flow in the participating laboratory Sites. RC-RNA = Reference-Control-RNA (=centrally extracted RNA/CRNA); Set 1 & 2 = sections for peripheral RNA extraction on day 1 and 2. Specified work flow in the peripheral lab sites is depicted on the right: The protocol was conceived for three days. On day 1 the CRNA was measured whereas on day 2 and day 3 RNA was extracted in the lab sites and then measured. (RC-RNA = reference control-RNA; RT-qPC R = reverse transcriptase quantitative polymerase chain reaction). (C) Selection criteria (according to REMARK) of the consecutive MIBC validation cohort ( n = 88). RNA extraction and tissue microarray (TMA) preparation were performed using the same FFPE block with tumor content of at least 30%. PD-L1 staining was carried out on Ventana Benchmark Ultra autostainer.

Article Snippet: Therefore, we conducted a multicenter round robin test to (I) analyze correlation between a commonly used immunohistochemical (IHC) PD-L1 assay (22c3, Dako) and a reverse transcriptase quantitative polymerase chain reaction kit (RT-qPCR, CheckPointTYPER©, STRATIFYER Molecular Pathology, Cologne, Germany), to (II) investigate the influence of central and local RNA (C/LRNA) extraction as well as of various thermocyclers (III) on reproducibility in 7 laboratories, and to (IV) compare the positive detection rate and prognostic relevance of both assays.

Techniques: RNA Extraction, Real-time Polymerase Chain Reaction, Selection, Microarray, Blocking Assay, Staining